PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G207100.1.p
Common NameLOC101775155, SETIT_000552mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 684aa    MW: 72939.4 Da    PI: 5.2689
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G207100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-08476497526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+++  +G C +GdrCkF+H+
  Seita.5G207100.1.p 476 ECHNYKNNGMCIRGDRCKFSHV 497
                         6********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.784417444IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-5418442IPR000571Zinc finger, CCCH-type
SMARTSM003560.0058418443IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-4446472IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971446473IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.2E-5447471IPR000571Zinc finger, CCCH-type
SMARTSM003560.023474498IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.577476499IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5476497IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4477496IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MEDALATSPL APPPAPLAAA AVLTRRRSHL DSASYRTLSR LFSHCLHLHP SPREGTALPE  60
AEPAAANPTG GDSGDSLQVP RGADFDPLKN VEKEAADAGG PPLYGTVSPA REQPAAANPT  120
GNPCEAGAPQ RSHDDANEVV AVESTCVNTG AGVDESGIGA ELVDVGDDAL KSVKACLEMT  180
EVDESVEGAL GNEDGQLLLD AMMTNFTGLI DDVGAGVVPA QPCVVSGGEL QNSKASEDLN  240
QSVGRIEDGE PVTNLDHELN GDGGFEEGEI EGEFQALDSE ESGDSELGDN DDSEEKLGGD  300
SVSRGSGANK SSDHGTQFGN LHSTPEIIGN GHLTLNNDGV RGGAQISVTR APAVSYDEIV  360
DWNGTPLPDN MAPNPGKKRK RSMTEERKAK KTENKRKKRA QQRIADGVNR PKIQHVMKPK  420
KPCHFYDHGK CQQGNKCKFS HDFTPSTKSK PCKHFACGSC LKGDDCPYDH ELSKYECHNY  480
KNNGMCIRGD RCKFSHVMQT TEGTPTQDAK PSDASLAYEK TNLREQTSSQ KTSTVHNGEP  540
VTSAPTKQQC SILKNLAGFS INSQNVSNRI PKGVQFLPID KSGSNLSSLR LGALSIEKPR  600
NANATQHQYL REHEAERQKI AKQNGQESLL DEKNSSNEAT VHPFSDPKKA TLPISSTATS  660
VHTQPEVSEA SRILQEFLFG AGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376381KKRKRS
2378398RKRSMTEERKAKKTENKRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969019.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
SwissprotQ657B31e-177C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLK3XF830.0K3XF83_SETIT; Uncharacterized protein
STRINGSi000552m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743